HL_8WID_014

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUUAAC

Length

7 nucleotides

Bulged bases

8WID|1|a|U|599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WID_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1189

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8WID|1|a|G|597
8WID|1|a|C|598
8WID|1|a|U|599
8WID|1|a|U|600
8WID|1|a|A|601
8WID|1|a|A|602
8WID|1|a|C|603

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain q

30S ribosomal protein S16