HL_8WND_001

3D structure

PDB id

8WND (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Saccharomyces cerevisiae isoleucyl-tRNA synthetase in complex with tRNA(Ile) and isoleucine

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCUGAUAAG

Length

9 nucleotides

Bulged bases

8WND|1|R|G|34, 8WND|1|R|A|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WND_001 not in the Motif Atlas

Homologous match to HL_8WND_004

Geometric discrepancy: 0.0638

The information below is about HL_8WND_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33983.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8WND|1|R|C|31
8WND|1|R|C|32
8WND|1|R|U|33
8WND|1|R|G|34
8WND|1|R|A|35
8WND|1|R|U|36
8WND|1|R|A|37
8WND|1|R|A|38
8WND|1|R|G|39

Current chains

Chain R

tRNA(Ile)

Nearby chains

Chain B

isoleucine--tRNA ligase