HL_8WRC_008

3D structure

PDB id

8WRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-Resolved Ambient Temperature Kineto-Crystallographic Structure of Initiation Factor in Complex with Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.59 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

8WRC|1|A|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WRC_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0853

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8WRC|1|A|C|320
8WRC|1|A|A|321
8WRC|1|A|C|322
8WRC|1|A|U|323
8WRC|1|A|G|324
8WRC|1|A|A|325
8WRC|1|A|G|326
8WRC|1|A|A|327
8WRC|1|A|C|328
8WRC|1|A|A|329
8WRC|1|A|C|330
8WRC|1|A|G|331
8WRC|1|A|G|332
8WRC|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20