HL_8XP2_006

3D structure

PDB id

8XP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

8XP2|1|S2|C|324, 8XP2|1|S2|C|325, 8XP2|1|S2|C|326

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XP2_006 not in the Motif Atlas

Geometric match to HL_5J7L_214

Geometric discrepancy: 0.3683

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8XP2|1|S2|C|322
8XP2|1|S2|C|323
8XP2|1|S2|C|324
8XP2|1|S2|C|325
8XP2|1|S2|C|326
8XP2|1|S2|G|327
8XP2|1|S2|U|328
8XP2|1|S2|G|329

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6