HL_8XP2_007
3D structure
- PDB id
- 8XP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with LARP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUCGCCGUGCC
- Length
- 11 nucleotides
- Bulged bases
- 8XP2|1|S2|G|385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XP2_007 not in the Motif Atlas
- Geometric match to HL_5AXM_001
- Geometric discrepancy: 0.3946
- The information below is about HL_5AXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8XP2|1|S2|G|377
8XP2|1|S2|U|378
8XP2|1|S2|C|379
8XP2|1|S2|G|380
8XP2|1|S2|C|381
8XP2|1|S2|C|382
8XP2|1|S2|G|383
8XP2|1|S2|U|384
8XP2|1|S2|G|385
8XP2|1|S2|C|386
8XP2|1|S2|C|387
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
Coloring options: