HL_8XP2_011

3D structure

PDB id

8XP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8XP2|1|S2|A|500, 8XP2|1|S2|C|502, 8XP2|1|S2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XP2_011 not in the Motif Atlas

Homologous match to HL_8P9A_201

Geometric discrepancy: 0.1991

The information below is about HL_8P9A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8XP2|1|S2|C|498
8XP2|1|S2|G|499
8XP2|1|S2|A|500
8XP2|1|S2|C|501
8XP2|1|S2|C|502
8XP2|1|S2|C|503
8XP2|1|S2|G|504

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24