HL_8XP2_016

3D structure

PDB id

8XP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCCGAGCCGC

Length

11 nucleotides

Bulged bases

8XP2|1|S2|G|836, 8XP2|1|S2|G|838, 8XP2|1|S2|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XP2|1|S2|G|832
8XP2|1|S2|C|833
8XP2|1|S2|C|834
8XP2|1|S2|C|835
8XP2|1|S2|G|836
8XP2|1|S2|A|837
8XP2|1|S2|G|838
8XP2|1|S2|C|839
8XP2|1|S2|C|840
8XP2|1|S2|G|841
8XP2|1|S2|C|842

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24