HL_8XP2_033

3D structure

PDB id

8XP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGGGGUCGGCCCACGGCCCUGG

Length

23 nucleotides

Bulged bases

8XP2|1|S2|G|1760, 8XP2|1|S2|U|1761, 8XP2|1|S2|C|1762, 8XP2|1|S2|G|1763, 8XP2|1|S2|G|1764, 8XP2|1|S2|C|1765, 8XP2|1|S2|C|1766, 8XP2|1|S2|C|1767, 8XP2|1|S2|A|1768, 8XP2|1|S2|C|1769, 8XP2|1|S2|G|1770, 8XP2|1|S2|G|1771, 8XP2|1|S2|C|1773, 8XP2|1|S2|C|1774

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XP2|1|S2|C|1755
8XP2|1|S2|C|1756
8XP2|1|S2|G|1757
8XP2|1|S2|G|1758
8XP2|1|S2|G|1759
8XP2|1|S2|G|1760
8XP2|1|S2|U|1761
8XP2|1|S2|C|1762
8XP2|1|S2|G|1763
8XP2|1|S2|G|1764
8XP2|1|S2|C|1765
8XP2|1|S2|C|1766
8XP2|1|S2|C|1767
8XP2|1|S2|A|1768
8XP2|1|S2|C|1769
8XP2|1|S2|G|1770
8XP2|1|S2|G|1771
8XP2|1|S2|C|1772
8XP2|1|S2|C|1773
8XP2|1|S2|C|1774
8XP2|1|S2|U|1775
8XP2|1|S2|G|1776
8XP2|1|S2|G|1777

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6