HL_8XP3_028

3D structure

PDB id

8XP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

8XP3|1|S2|A|1421, 8XP3|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XP3_028 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.455

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8XP3|1|S2|C|1416
8XP3|1|S2|C|1417
8XP3|1|S2|C|1418
8XP3|1|S2|C|1419
8XP3|1|S2|G|1420
8XP3|1|S2|A|1421
8XP3|1|S2|G|1422
8XP3|1|S2|C|1423
8XP3|1|S2|G|1424

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

40S ribosomal protein S19