HL_8XP3_033

3D structure

PDB id

8XP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGGGGUCGGCCCACGGCCCUGG

Length

23 nucleotides

Bulged bases

8XP3|1|S2|G|1760, 8XP3|1|S2|U|1761, 8XP3|1|S2|C|1762, 8XP3|1|S2|G|1763, 8XP3|1|S2|G|1764, 8XP3|1|S2|C|1765, 8XP3|1|S2|C|1766, 8XP3|1|S2|C|1767, 8XP3|1|S2|A|1768, 8XP3|1|S2|C|1769, 8XP3|1|S2|G|1770, 8XP3|1|S2|C|1773, 8XP3|1|S2|C|1774

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XP3|1|S2|C|1755
8XP3|1|S2|C|1756
8XP3|1|S2|G|1757
8XP3|1|S2|G|1758
8XP3|1|S2|G|1759
8XP3|1|S2|G|1760
8XP3|1|S2|U|1761
8XP3|1|S2|C|1762
8XP3|1|S2|G|1763
8XP3|1|S2|G|1764
8XP3|1|S2|C|1765
8XP3|1|S2|C|1766
8XP3|1|S2|C|1767
8XP3|1|S2|A|1768
8XP3|1|S2|C|1769
8XP3|1|S2|G|1770
8XP3|1|S2|G|1771
8XP3|1|S2|C|1772
8XP3|1|S2|C|1773
8XP3|1|S2|C|1774
8XP3|1|S2|U|1775
8XP3|1|S2|G|1776
8XP3|1|S2|G|1777

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6