HL_8XSX_002

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCCCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSX_002 not in the Motif Atlas

Homologous match to HL_4TUE_034

Geometric discrepancy: 0.1231

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8XSX|1|CC|G|30
8XSX|1|CC|C|31
8XSX|1|CC|C|32
8XSX|1|CC|C|33
8XSX|1|CC|A|34
8XSX|1|CC|U|35
8XSX|1|CC|A|36
8XSX|1|CC|A|37
8XSX|1|CC|C|38

Current chains

Chain CC

E-tRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SP

40S ribosomal protein S15

Chain SQ

40S ribosomal protein S16