HL_8XSX_003
3D structure
- PDB id
- 8XSX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XSX_003 not in the Motif Atlas
- Homologous match to HL_1QU2_003
- Geometric discrepancy: 0.246
- The information below is about HL_1QU2_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8XSX|1|CC|G|52
8XSX|1|CC|A|53
8XSX|1|CC|U|54
8XSX|1|CC|C|55
8XSX|1|CC|G|56
8XSX|1|CC|A|57
8XSX|1|CC|A|58
8XSX|1|CC|A|59
8XSX|1|CC|C|60
Current chains
- Chain CC
- E-tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lz
- 60S ribosomal protein L10a
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