HL_8XSX_029

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUGGGGCCGAAACGAUCUCA

Length

20 nucleotides

Bulged bases

8XSX|1|L5|U|1757, 8XSX|1|L5|A|1767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|L5|U|1756
8XSX|1|L5|U|1757
8XSX|1|L5|G|1758
8XSX|1|L5|G|1759
8XSX|1|L5|G|1760
8XSX|1|L5|G|1761
8XSX|1|L5|C|1762
8XSX|1|L5|C|1763
8XSX|1|L5|G|1764
8XSX|1|L5|A|1765
8XSX|1|L5|A|1766
8XSX|1|L5|A|1767
8XSX|1|L5|C|1768
8XSX|1|L5|G|1769
8XSX|1|L5|A|1770
8XSX|1|L5|U|1771
8XSX|1|L5|C|1772
8XSX|1|L5|U|1773
8XSX|1|L5|C|1774
8XSX|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like

Chain LJ

60S ribosomal protein L11

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SP

40S ribosomal protein S15