HL_8XSX_042
3D structure
- PDB id
- 8XSX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 8XSX|1|L5|U|2530, 8XSX|1|L5|C|2531
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XSX_042 not in the Motif Atlas
- Homologous match to HL_5TBW_035
- Geometric discrepancy: 0.0738
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8XSX|1|L5|G|2523
8XSX|1|L5|U|2524
8XSX|1|L5|U|2525
8XSX|1|L5|C|2526
8XSX|1|L5|A|2527
8XSX|1|L5|G|2528
8XSX|1|L5|A|2529
8XSX|1|L5|U|2530
8XSX|1|L5|C|2531
8XSX|1|L5|C|2532
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CA
- Proliferation-associated protein 2G4
- Chain LR
- 60S ribosomal protein L19
- Chain LX
- 60S ribosomal protein L23a
- Chain Lg
- 60S ribosomal protein L34
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