HL_8XSX_059

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8XSX|1|L5|A|3876, 8XSX|1|L5|A|3877, 8XSX|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSX_059 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0494

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8XSX|1|L5|G|3873
8XSX|1|L5|G|3874
8XSX|1|L5|G|3875
8XSX|1|L5|A|3876
8XSX|1|L5|A|3877
8XSX|1|L5|C|3878
8XSX|1|L5|G|3879
8XSX|1|L5|G|3880
8XSX|1|L5|G|3881
8XSX|1|L5|C|3882

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32