HL_8XSX_061

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|L5|A|4098
8XSX|1|L5|G|4099
8XSX|1|L5|C|4100
8XSX|1|L5|C|4101
8XSX|1|L5|C|4102
8XSX|1|L5|C|4103
8XSX|1|L5|G|4104
8XSX|1|L5|A|4105
8XSX|1|L5|G|4106
8XSX|1|L5|G|4107
8XSX|1|L5|G|4108
8XSX|1|L5|G|4109
8XSX|1|L5|C|4110
8XSX|1|L5|U|4111

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain Lg

60S ribosomal protein L34

Chain SB

40S ribosomal protein S3a