HL_8XSX_079

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8XSX|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSX_079 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0788

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8XSX|1|L5|G|4975
8XSX|1|L5|U|4976
8XSX|1|L5|A|4977
8XSX|1|L5|G|4978
8XSX|1|L5|A|4979
8XSX|1|L5|C|4980
8XSX|1|L5|G|4981
8XSX|1|L5|A|4982
8XSX|1|L5|C|4983

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17