HL_8XSX_115

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

8XSX|1|S2|C|1423

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSX_115 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.4521

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8XSX|1|S2|C|1416
8XSX|1|S2|C|1417
8XSX|1|S2|C|1418
8XSX|1|S2|C|1419
8XSX|1|S2|G|1420
8XSX|1|S2|A|1421
8XSX|1|S2|G|1422
8XSX|1|S2|C|1423
8XSX|1|S2|G|1424

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

40S ribosomal protein S19