HL_8XSX_126

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCCCGAGCCGC

Length

11 nucleotides

Bulged bases

8XSX|1|S2|G|836, 8XSX|1|S2|G|838, 8XSX|1|S2|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|S2|G|832
8XSX|1|S2|C|833
8XSX|1|S2|C|834
8XSX|1|S2|C|835
8XSX|1|S2|G|836
8XSX|1|S2|A|837
8XSX|1|S2|G|838
8XSX|1|S2|C|839
8XSX|1|S2|C|840
8XSX|1|S2|G|841
8XSX|1|S2|C|842

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24