HL_8XSY_002

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAACC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSY_002 not in the Motif Atlas

Homologous match to HL_6PMO_004

Geometric discrepancy: 0.3866

The information below is about HL_6PMO_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSY|1|CC|G|29
8XSY|1|CC|A|36
8XSY|1|CC|A|37
8XSY|1|CC|C|38
8XSY|1|CC|C|39

Current chains

Chain CC

E-tRNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SO

40S ribosomal protein S14