HL_8XSY_017

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGACUGUCCCCAGUGC

Length

16 nucleotides

Bulged bases

8XSY|1|L5|G|1178, 8XSY|1|L5|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSY|1|L5|G|1173
8XSY|1|L5|G|1174
8XSY|1|L5|A|1175
8XSY|1|L5|C|1176
8XSY|1|L5|U|1177
8XSY|1|L5|G|1178
8XSY|1|L5|U|1179
8XSY|1|L5|C|1180
8XSY|1|L5|C|1181
8XSY|1|L5|C|1182
8XSY|1|L5|C|1183
8XSY|1|L5|A|1184
8XSY|1|L5|G|1185
8XSY|1|L5|U|1186
8XSY|1|L5|G|1187
8XSY|1|L5|C|1188

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

Large ribosomal subunit protein uL16