HL_8XSY_022

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

8XSY|1|L5|U|1410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSY_022 not in the Motif Atlas

Geometric match to HL_4V9F_004

Geometric discrepancy: 0.3297

The information below is about HL_4V9F_004

Detailed Annotation

Mini UNCG related

Broad Annotation

Mini UNCG related

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8XSY|1|L5|C|1405
8XSY|1|L5|G|1406
8XSY|1|L5|C|1407
8XSY|1|L5|G|1408
8XSY|1|L5|C|1409
8XSY|1|L5|U|1410
8XSY|1|L5|C|1411
8XSY|1|L5|G|1412

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L29