HL_8XSY_029
3D structure
- PDB id
- 8XSY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUGGGGCCGAAACGAUCUCA
- Length
- 20 nucleotides
- Bulged bases
- 8XSY|1|L5|U|1757, 8XSY|1|L5|A|1767
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XSY|1|L5|U|1756
8XSY|1|L5|U|1757
8XSY|1|L5|G|1758
8XSY|1|L5|G|1759
8XSY|1|L5|G|1760
8XSY|1|L5|G|1761
8XSY|1|L5|C|1762
8XSY|1|L5|C|1763
8XSY|1|L5|G|1764
8XSY|1|L5|A|1765
8XSY|1|L5|A|1766
8XSY|1|L5|A|1767
8XSY|1|L5|C|1768
8XSY|1|L5|G|1769
8XSY|1|L5|A|1770
8XSY|1|L5|U|1771
8XSY|1|L5|C|1772
8XSY|1|L5|U|1773
8XSY|1|L5|C|1774
8XSY|1|L5|A|1775
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain LD
- 60S ribosomal protein L5
- Chain LI
- Large ribosomal subunit protein uL16
- Chain LJ
- 60S ribosomal protein L11
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
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