HL_8XSY_030

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

8XSY|1|L5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSY_030 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.3525

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8XSY|1|L5|C|1816
8XSY|1|L5|U|1817
8XSY|1|L5|G|1818
8XSY|1|L5|G|1819
8XSY|1|L5|C|1820
8XSY|1|L5|G|1821
8XSY|1|L5|U|1822
8XSY|1|L5|G|1823

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29