HL_8XSY_047

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

8XSY|1|L5|U|2707, 8XSY|1|L5|U|2708, 8XSY|1|L5|C|2709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSY_047 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1324

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8XSY|1|L5|G|2705
8XSY|1|L5|G|2706
8XSY|1|L5|U|2707
8XSY|1|L5|U|2708
8XSY|1|L5|C|2709
8XSY|1|L5|C|2710

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CA

Proliferation-associated protein 2G4

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a