HL_8XSY_060

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAGCCCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUG*A

Length

113 nucleotides

Bulged bases

8XSY|1|L5|G|3958, 8XSY|1|L5|A|3962, 8XSY|1|L5|G|4035, 8XSY|1|L5|C|4038, 8XSY|1|L5|U|4044, 8XSY|1|L5|G|4007, 8XSY|1|L5|C|4008, 8XSY|1|L5|C|4009, 8XSY|1|L5|C|4010, 8XSY|1|L5|G|4011, 8XSY|1|L5|G|4012, 8XSY|1|L5|G|4013, 8XSY|1|L5|G|4014, 8XSY|1|L5|C|4015, 8XSY|1|L5|G|4016, 8XSY|1|L5|G|4017, 8XSY|1|L5|G|4018, 8XSY|1|L5|G|4019, 8XSY|1|L5|U|4020, 8XSY|1|L5|C|4021, 8XSY|1|L5|C|4022, 8XSY|1|L5|G|4023, 8XSY|1|L5|C|4024, 8XSY|1|L5|C|4025, 8XSY|1|L5|G|4026, 8XSY|1|L5|G|4027, 8XSY|1|L5|C|4028, 8XSY|1|L5|C|4029, 8XSY|1|L5|C|4030, 8XSY|1|L5|U|4031, 8XSY|1|L5|G|4032, 8XSY|1|L5|C|4033, 8XSY|1|L5|G|4034, 8XSY|1|L5|G|4035, 8XSY|1|L5|C|4038, 8XSY|1|L5|G|4039, 8XSY|1|L5|G|4042, 8XSY|1|L5|U|4044, 8XSY|1|L5|G|4045, 8XSY|1|L5|C|4051, 8XSY|1|L5|C|4052, 8XSY|1|L5|A|4053, 8XSY|1|L5|C|4054

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSY|1|L5|U|3950
8XSY|1|L5|G|3951
8XSY|1|L5|A|3952
8XSY|1|L5|G|3953
8XSY|1|L5|A|3954
8XSY|1|L5|G|3955
8XSY|1|L5|G|3956
8XSY|1|L5|U|3957
8XSY|1|L5|G|3958
8XSY|1|L5|U|3959
8XSY|1|L5|A|3960
8XSY|1|L5|G|3961
8XSY|1|L5|A|3962
8XSY|1|L5|A|3963
8XSY|1|L5|U|3964
8XSY|1|L5|A|3965
8XSY|1|L5|A|3966
8XSY|1|L5|G|3967
8XSY|1|L5|U|3968
8XSY|1|L5|G|3969
8XSY|1|L5|G|3970
8XSY|1|L5|G|3971
8XSY|1|L5|A|3972
8XSY|1|L5|G|3973
8XSY|1|L5|G|3974
8XSY|1|L5|C|3975
8XSY|1|L5|C|3976
8XSY|1|L5|C|3977
8XSY|1|L5|G|4034
8XSY|1|L5|G|4035
8XSY|1|L5|G|4036
8XSY|1|L5|C|4037
8XSY|1|L5|C|4038
8XSY|1|L5|G|4039
8XSY|1|L5|C|4040
8XSY|1|L5|C|4041
8XSY|1|L5|G|4042
8XSY|1|L5|G|4043
8XSY|1|L5|U|4044
8XSY|1|L5|G|4045
8XSY|1|L5|A|4046
8XSY|1|L5|A|4047
8XSY|1|L5|A|4048
8XSY|1|L5|U|4049
8XSY|1|L5|A|4050
8XSY|1|L5|C|4051
8XSY|1|L5|C|4052
8XSY|1|L5|A|4053
8XSY|1|L5|C|4054
8XSY|1|L5|U|4055
8XSY|1|L5|A|4056
8XSY|1|L5|C|4057
8XSY|1|L5|U|4058
8XSY|1|L5|C|4059
8XSY|1|L5|U|4060
8XSY|1|L5|G|4061
8XSY|1|L5|A|4062
8XSY|1|L5|G|4007
8XSY|1|L5|C|4008
8XSY|1|L5|C|4009
8XSY|1|L5|C|4010
8XSY|1|L5|G|4011
8XSY|1|L5|G|4012
8XSY|1|L5|G|4013
8XSY|1|L5|G|4014
8XSY|1|L5|C|4015
8XSY|1|L5|G|4016
8XSY|1|L5|G|4017
8XSY|1|L5|G|4018
8XSY|1|L5|G|4019
8XSY|1|L5|U|4020
8XSY|1|L5|C|4021
8XSY|1|L5|C|4022
8XSY|1|L5|G|4023
8XSY|1|L5|C|4024
8XSY|1|L5|C|4025
8XSY|1|L5|G|4026
8XSY|1|L5|G|4027
8XSY|1|L5|C|4028
8XSY|1|L5|C|4029
8XSY|1|L5|C|4030
8XSY|1|L5|U|4031
8XSY|1|L5|G|4032
8XSY|1|L5|C|4033
8XSY|1|L5|G|4034
8XSY|1|L5|G|4035
8XSY|1|L5|G|4036
8XSY|1|L5|C|4037
8XSY|1|L5|C|4038
8XSY|1|L5|G|4039
8XSY|1|L5|C|4040
8XSY|1|L5|C|4041
8XSY|1|L5|G|4042
8XSY|1|L5|G|4043
8XSY|1|L5|U|4044
8XSY|1|L5|G|4045
8XSY|1|L5|A|4046
8XSY|1|L5|A|4047
8XSY|1|L5|A|4048
8XSY|1|L5|U|4049
8XSY|1|L5|A|4050
8XSY|1|L5|C|4051
8XSY|1|L5|C|4052
8XSY|1|L5|A|4053
8XSY|1|L5|C|4054
8XSY|1|L5|U|4055
8XSY|1|L5|A|4056
8XSY|1|L5|C|4057
8XSY|1|L5|U|4058
8XSY|1|L5|C|4059
8XSY|1|L5|U|4060
8XSY|1|L5|G|4061
*
8XSY|1|L5|A|4062

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain Li

60S ribosomal protein L36

Chain Lz

60S ribosomal protein L10a

Chain SB

40S ribosomal protein S3a