HL_8XSY_089

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8XSY|1|S2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSY_089 not in the Motif Atlas

Geometric match to HL_4WF9_020

Geometric discrepancy: 0.2848

The information below is about HL_4WF9_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8XSY|1|S2|G|156
8XSY|1|S2|U|157
8XSY|1|S2|A|158
8XSY|1|S2|A|159
8XSY|1|S2|U|160
8XSY|1|S2|U|161
8XSY|1|S2|C|162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24