HL_8XSY_115

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

8XSY|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSY_115 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3249

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8XSY|1|S2|C|1416
8XSY|1|S2|C|1417
8XSY|1|S2|C|1418
8XSY|1|S2|C|1419
8XSY|1|S2|G|1420
8XSY|1|S2|A|1421
8XSY|1|S2|G|1422
8XSY|1|S2|C|1423
8XSY|1|S2|G|1424

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

40S ribosomal protein S19