HL_8XSY_122

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

8XSY|1|CC|C|16, 8XSY|1|CC|G|17

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSY_122 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.2129

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8XSY|1|CC|C|13
8XSY|1|CC|A|14
8XSY|1|CC|G|15
8XSY|1|CC|C|16
8XSY|1|CC|G|17
8XSY|1|CC|G|18
8XSY|1|CC|A|19
8XSY|1|CC|A|20
8XSY|1|CC|G|21

Current chains

Chain CC

E-tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA