HL_8XSZ_006

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_006 not in the Motif Atlas

Homologous match to HL_1QU2_003

Geometric discrepancy: 0.211

The information below is about HL_1QU2_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8XSZ|1|CD|G|52
8XSZ|1|CD|A|53
8XSZ|1|CD|U|54
8XSZ|1|CD|C|55
8XSZ|1|CD|G|56
8XSZ|1|CD|A|57
8XSZ|1|CD|A|58
8XSZ|1|CD|A|59
8XSZ|1|CD|C|60

Current chains

Chain CD

tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large ribosomal subunit protein uL16