HL_8XSZ_011

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8XSZ|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_011 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.4814

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8XSZ|1|L5|U|204
8XSZ|1|L5|C|205
8XSZ|1|L5|U|206
8XSZ|1|L5|G|207
8XSZ|1|L5|A|208
8XSZ|1|L5|U|209
8XSZ|1|L5|C|210
8XSZ|1|L5|G|211

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32