HL_8XSZ_020

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACUGUCCCCAGUGC

Length

16 nucleotides

Bulged bases

8XSZ|1|L5|G|1178, 8XSZ|1|L5|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|L5|G|1173
8XSZ|1|L5|G|1174
8XSZ|1|L5|A|1175
8XSZ|1|L5|C|1176
8XSZ|1|L5|U|1177
8XSZ|1|L5|G|1178
8XSZ|1|L5|U|1179
8XSZ|1|L5|C|1180
8XSZ|1|L5|C|1181
8XSZ|1|L5|C|1182
8XSZ|1|L5|C|1183
8XSZ|1|L5|A|1184
8XSZ|1|L5|G|1185
8XSZ|1|L5|U|1186
8XSZ|1|L5|G|1187
8XSZ|1|L5|C|1188

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

Large ribosomal subunit protein uL16