HL_8XSZ_032

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGGGGCCGAAACGAUCUCA

Length

20 nucleotides

Bulged bases

8XSZ|1|L5|U|1757, 8XSZ|1|L5|A|1767

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|L5|U|1756
8XSZ|1|L5|U|1757
8XSZ|1|L5|G|1758
8XSZ|1|L5|G|1759
8XSZ|1|L5|G|1760
8XSZ|1|L5|G|1761
8XSZ|1|L5|C|1762
8XSZ|1|L5|C|1763
8XSZ|1|L5|G|1764
8XSZ|1|L5|A|1765
8XSZ|1|L5|A|1766
8XSZ|1|L5|A|1767
8XSZ|1|L5|C|1768
8XSZ|1|L5|G|1769
8XSZ|1|L5|A|1770
8XSZ|1|L5|U|1771
8XSZ|1|L5|C|1772
8XSZ|1|L5|U|1773
8XSZ|1|L5|C|1774
8XSZ|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CD

Transfer RNA; tRNA

Chain LD

60S ribosomal protein L5

Chain LI

Large ribosomal subunit protein uL16

Chain LJ

60S ribosomal protein L11

Chain SP

40S ribosomal protein S15