HL_8XSZ_038

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGCCCGG

Length

8 nucleotides

Bulged bases

8XSZ|1|L5|C|2250

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_038 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3741

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

8XSZ|1|L5|C|2110
8XSZ|1|L5|G|2111
8XSZ|1|L5|G|2112
8XSZ|1|L5|C|2113
8XSZ|1|L5|C|2249
8XSZ|1|L5|C|2250
8XSZ|1|L5|G|2251
8XSZ|1|L5|G|2252

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6