HL_8XSZ_069

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_069 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.1074

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8XSZ|1|L5|C|4270
8XSZ|1|L5|A|4271
8XSZ|1|L5|G|4272
8XSZ|1|L5|A|4273
8XSZ|1|L5|A|4274
8XSZ|1|L5|G|4275
8XSZ|1|L5|G|4276
8XSZ|1|L5|G|4277

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a