HL_8XSZ_075

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_075 not in the Motif Atlas

Homologous match to HL_8C3A_064

Geometric discrepancy: 0.1399

The information below is about HL_8C3A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8XSZ|1|L5|U|4497
8XSZ|1|L5|U|4498
8XSZ|1|L5|G|4499
8XSZ|1|L5|U|4500
8XSZ|1|L5|U|4501
8XSZ|1|L5|C|4502
8XSZ|1|L5|A|4503

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CD

Transfer RNA; tRNA

Chain LB

60S ribosomal protein L3