HL_8XSZ_079

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8XSZ|1|L5|G|4694, 8XSZ|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_079 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0624

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8XSZ|1|L5|C|4688
8XSZ|1|L5|U|4689
8XSZ|1|L5|G|4690
8XSZ|1|L5|A|4691
8XSZ|1|L5|A|4692
8XSZ|1|L5|C|4693
8XSZ|1|L5|G|4694
8XSZ|1|L5|C|4695
8XSZ|1|L5|C|4696
8XSZ|1|L5|U|4697
8XSZ|1|L5|C|4698
8XSZ|1|L5|U|4699
8XSZ|1|L5|A|4700
8XSZ|1|L5|A|4701
8XSZ|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40