3D structure

PDB id
8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUAGACGAC
Length
9 nucleotides
Bulged bases
8XSZ|1|L5|U|4976
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8XSZ_082 not in the Motif Atlas
Homologous match to HL_8C3A_071
Geometric discrepancy: 0.1073
The information below is about HL_8C3A_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64690.4
Basepair signature
cWW-cSW-F-F-F-cWW
Number of instances in this motif group
9

Unit IDs

8XSZ|1|L5|G|4975
8XSZ|1|L5|U|4976
8XSZ|1|L5|A|4977
8XSZ|1|L5|G|4978
8XSZ|1|L5|A|4979
8XSZ|1|L5|C|4980
8XSZ|1|L5|G|4981
8XSZ|1|L5|A|4982
8XSZ|1|L5|C|4983

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LP
60S ribosomal protein L17
Chain Ld
60S ribosomal protein L31

Coloring options:


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