3D structure

PDB id
8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUGAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8XSZ_124 not in the Motif Atlas
Homologous match to HL_8C3A_227
Geometric discrepancy: 0.1175
The information below is about HL_8C3A_227
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
302

Unit IDs

8XSZ|1|S2|G|1847
8XSZ|1|S2|U|1848
8XSZ|1|S2|G|1849
8XSZ|1|S2|A|1850
8XSZ|1|S2|A|1851
8XSZ|1|S2|C|1852

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
60S ribosomal protein L41

Coloring options:


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