HL_8XSZ_125

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

8XSZ|1|CD|C|16, 8XSZ|1|CD|G|17

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_125 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.2196

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8XSZ|1|CD|C|13
8XSZ|1|CD|A|14
8XSZ|1|CD|G|15
8XSZ|1|CD|C|16
8XSZ|1|CD|G|17
8XSZ|1|CD|G|18
8XSZ|1|CD|A|19
8XSZ|1|CD|A|20
8XSZ|1|CD|G|21

Current chains

Chain CD

tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA