HL_8XSZ_130

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCCGAGCCGC

Length

11 nucleotides

Bulged bases

8XSZ|1|S2|G|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|S2|G|832
8XSZ|1|S2|C|833
8XSZ|1|S2|C|834
8XSZ|1|S2|C|835
8XSZ|1|S2|G|836
8XSZ|1|S2|A|837
8XSZ|1|S2|G|838
8XSZ|1|S2|C|839
8XSZ|1|S2|C|840
8XSZ|1|S2|G|841
8XSZ|1|S2|C|842

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24