HL_8XT0_011

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUUAG

Length

6 nucleotides

Bulged bases

8XT0|1|L1|C|366, 8XT0|1|L1|A|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_011 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.1336

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

8XT0|1|L1|U|365
8XT0|1|L1|C|366
8XT0|1|L1|U|367
8XT0|1|L1|U|368
8XT0|1|L1|A|369
8XT0|1|L1|G|370

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LO

Large ribosomal subunit protein uL15m