HL_8XT0_018

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAACAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_018 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.2512

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

8XT0|1|L1|A|649
8XT0|1|L1|A|650
8XT0|1|L1|A|651
8XT0|1|L1|C|652
8XT0|1|L1|A|653
8XT0|1|L1|U|654

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LQ

Large ribosomal subunit protein bL17m

Chain Lf

Large ribosomal subunit protein bL32m

Chain Sf

Large ribosomal subunit protein mL65