HL_8XT0_029

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGGGGCGA

Length

9 nucleotides

Bulged bases

8XT0|1|L1|G|1144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_029 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0983

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8XT0|1|L1|U|1142
8XT0|1|L1|U|1143
8XT0|1|L1|G|1144
8XT0|1|L1|G|1145
8XT0|1|L1|G|1146
8XT0|1|L1|G|1147
8XT0|1|L1|C|1148
8XT0|1|L1|G|1149
8XT0|1|L1|A|1150

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL16m

Chain La

Large ribosomal subunit protein bL27m