HL_8XT0_048

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_048 not in the Motif Atlas

Homologous match to HL_4LFB_010

Geometric discrepancy: 0.2706

The information below is about HL_4LFB_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8XT0|1|S1|C|195
8XT0|1|S1|G|196
8XT0|1|S1|A|197
8XT0|1|S1|A|198
8XT0|1|S1|A|199
8XT0|1|S1|G|200

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein bS16m

Chain SS

Small ribosomal subunit protein mS40

Chain Sb

Small ribosomal subunit protein mS26

Chain Sj

Small ribosomal subunit protein mS34