HL_8XT0_054

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

8XT0|1|S1|C|504, 8XT0|1|S1|A|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_054 not in the Motif Atlas

Geometric match to HL_6TQB_001

Geometric discrepancy: 0.1955

The information below is about HL_6TQB_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8XT0|1|S1|C|503
8XT0|1|S1|C|504
8XT0|1|S1|A|505
8XT0|1|S1|C|506
8XT0|1|S1|A|507
8XT0|1|S1|G|508

Current chains

Chain S1

12s rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain SO

Small ribosomal subunit protein uS15m

Chain Sn

Small ribosomal subunit protein mS38