HL_8XT0_058

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UACCCCA

Length

7 nucleotides

Bulged bases

8XT0|1|S1|C|730, 8XT0|1|S1|C|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_058 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1735

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8XT0|1|S1|U|726
8XT0|1|S1|A|727
8XT0|1|S1|C|728
8XT0|1|S1|C|729
8XT0|1|S1|C|730
8XT0|1|S1|C|731
8XT0|1|S1|A|732

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein uS7m

Chain SI

Small ribosomal subunit protein uS9m

Chain Se

Small ribosomal subunit protein mS29