HL_8XT0_060
3D structure
- PDB id
- 8XT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAGUAGAGUGC
- Length
- 11 nucleotides
- Bulged bases
- 8XT0|1|S1|U|801
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XT0_060 not in the Motif Atlas
- Homologous match to HL_6CZR_101
- Geometric discrepancy: 0.4824
- The information below is about HL_6CZR_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8XT0|1|S1|G|793
8XT0|1|S1|A|794
8XT0|1|S1|G|795
8XT0|1|S1|U|796
8XT0|1|S1|A|797
8XT0|1|S1|G|798
8XT0|1|S1|A|799
8XT0|1|S1|G|800
8XT0|1|S1|U|801
8XT0|1|S1|G|802
8XT0|1|S1|C|803
Current chains
- Chain S1
- 12s rRNA
Nearby chains
- Chain SI
- Small ribosomal subunit protein uS9m
- Chain SJ
- Small ribosomal subunit protein uS10m
- Chain SN
- Small ribosomal subunit protein uS14m
- Chain Si
- Small ribosomal subunit protein mS33
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