HL_8XT1_023

3D structure

PDB id

8XT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAUCACCAGUAUU

Length

15 nucleotides

Bulged bases

8XT1|1|L1|A|851, 8XT1|1|L1|C|853, 8XT1|1|L1|U|861

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT1|1|L1|A|848
8XT1|1|L1|G|849
8XT1|1|L1|C|850
8XT1|1|L1|A|851
8XT1|1|L1|U|852
8XT1|1|L1|C|853
8XT1|1|L1|A|854
8XT1|1|L1|C|855
8XT1|1|L1|C|856
8XT1|1|L1|A|857
8XT1|1|L1|G|858
8XT1|1|L1|U|859
8XT1|1|L1|A|860
8XT1|1|L1|U|861
8XT1|1|L1|U|862

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lk

Large ribosomal subunit protein mL37