HL_8XT1_028

3D structure

PDB id

8XT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAACAGUAACCU

Length

12 nucleotides

Bulged bases

8XT1|1|L1|A|1090

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT1_028 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.378

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

8XT1|1|L1|A|1083
8XT1|1|L1|A|1084
8XT1|1|L1|A|1085
8XT1|1|L1|C|1086
8XT1|1|L1|A|1087
8XT1|1|L1|G|1088
8XT1|1|L1|U|1089
8XT1|1|L1|A|1090
8XT1|1|L1|A|1122
8XT1|1|L1|C|1123
8XT1|1|L1|C|1124
8XT1|1|L1|U|1125

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein bL9m

Chain Lb

Large ribosomal subunit protein bL28m